Protein-Protein interaction data visualization tools




Knight JD, Liu G, Zhang JP, Pasculescu A, Choi H, Gingras AC. A web-tool for visualizing quantitative protein-protein interaction data. Proteomics. 2015, 15(8): 1432-1436. PMID: 25422071


NEW! We have created a new website, ProHits-viz, enabling dynamic data visualization of dot plots and heat maps. We also introduce several new tools on this website. This site is still in beta testing and feedback is greatly appreciated. To cite results obtained from this new website, please refer to "prohits-viz, Knight et al., manuscript in preparation".

Dotplot and heatmap generator
Generates dot plots and heatmaps for spectral count data using SAINTexpress results as input.

Fold change heatmap
Converts fold change data into a dot plot and heatmap. The user must supply two matrices containing fold change and confidence values.

Bait versus Bait plot
Scatter plot tool for comparing the prey counts of one bait versus another (mutant versus wild-type, treated versus untreated, etc). Input is a SAINTexpress file with data on the two baits. The first bait reported in the file will be used as the "wild-type".

 
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